anndata-fcs

Converting CITESeq data to FCS file format. anndata-fcs implements function to convert from AnnData object to FlowData objects, DataFrame objects and vice versa. For loading and generation of FCS files anndata-fcs uses the implementation of the flowio package.

Get started

You can install anndata-fcs with pip:

pip install anndata-fcs

For more details, see Installation.

Contact

If you found a bug, please use the Issue tracker.

Start

• Installation
  • Development
  • Dependencies
• Vignette
  • Load anndata object from rawdata
  • Filter CITESeq data
  • Generate FCS file
  • Gating on FCS file
  • Recover anndata from gated FCS file

API Documentation

• anndata_fcs
  • Attributes
  • Functions
  • Package Contents
    • __version__
    • anndata_to_fcs()
    • fcs_to_anndata()
    • fcs_to_dataframe()
    • gate_polygon()
    • gate_polygon_subset()
    • scatter()